Tables

result summary tables

Table 1 Number of genes found up- or down-regulated (|log2FC| > 0.5 and p-adjust value < 0.05) according to age and treatments, and probe gene annotation.

Genes Up regulated Genes Down regulated Total DE genes Gene
Annotation
HUGO Ensembl
Age 149 60 209 95% 93%
Treatment 0 0 0 0% 0%
Age contrast within groups
NF between 35-49 days 7 3 10 100% 100%
FF between 35-49 days 231 119 350 96% 91%
Fab between 35-49 days 8 1 9 100% 89%

Table 2 Top-20 up- and down-regulated DE genes according to age in ileal mucosa

Up-regulated

Associated.Transcript.Name

log2FC

adj.P.Val

IDO1

3.06

0.001

REG3G

2.89

0.000

DDX60

2.18

0.000

HERC5

1.91

0.000

USP18

1.86

0.000

UBD

1.79

0.001

FABP4

1.62

0.000

CCL5

1.58

0.000

GZMH

1.54

0.001

RSAD2

1.50

0.014

CYP1A1

1.48

0.001

IRF7

1.45

0.000

LYG2

1.43

0.000

ITLN2

1.41

0.000

ISG15

1.39

0.003

XAF1

1.39

0.000

AQP4

1.39

0.000

GBP1

1.37

0.001

OASL

1.32

0.001

IFI44

1.30

0.000

Down-regulated

Associated.Transcript.Name

log2FC

adj.P.Val

NPC1L1

-1.96

0.007

HMGCS2

-1.75

0.001

FGF19

-1.69

0.000

TM4SF4

-1.46

0.006

EPOR

-1.41

0.005

CA1

-1.38

0.003

SAA3

-1.10

0.001

ANXA13

-1.09

0.001

ME1

-1.08

0.033

MMP1

-1.08

0.020

NR0B2

-1.01

0.024

SLC39A8

-0.99

0.007

S100A12

-0.96

0.038

SUSD2

-0.96

0.002

CNDP1

-0.92

0.001

SLC6A8

-0.91

0.000

IGF2BP3

-0.91

0.000

CDC42EP4

-0.85

0.050

SLC27A4

-0.83

0.006

HBEGF

-0.82

0.002

Table 3 Top-20 ileal mucosa up- and down-regulated DE genes according to age in the FF group

In the FF group rabbit pups had access in the nest to feces excreted by unrelated does

Up-regulated

Associated.Transcript.Name

log2FC

adj.P.Val

REG3G

3.96

0.000

IDO1

3.59

0.042

DDX60

3.17

0.000

UBD

2.85

0.006

GZMH

2.66

0.002

USP18

2.40

0.005

HERC5

2.39

0.001

GBP1

2.37

0.001

LYG2

2.21

0.001

XAF1

2.18

0.002

CYP1A1

2.17

0.005

CCL5

2.10

0.003

ISG15

1.96

0.021

ACTN2

1.95

0.001

IRF7

1.92

0.008

DDX58

1.81

0.001

IFI44

1.81

0.002

EPSTI1

1.77

0.001

CXCL10

1.73

0.032

IFIT3

1.72

0.029

Down-regulated

Associated.Transcript.Name

log2FC

adj.P.Val

FGF19

-3.37

0.000

HMGCS2

-3.01

0.001

NPC1L1

-2.79

0.046

TM4SF4

-2.38

0.014

CA1

-2.20

0.007

EPOR

-2.02

0.035

MMP1

-1.94

0.020

NR0B2

-1.83

0.024

ANXA13

-1.63

0.005

NPL

-1.57

0.001

SUSD2

-1.54

0.005

SLC27A4

-1.42

0.010

CYP2A10

-1.36

0.005

SLC52A3

-1.30

0.004

SLC5A9

-1.28

0.008

NUDCD3

-1.21

0.009

IGF2BP3

-1.20

0.002

HBEGF

-1.19

0.007

EDN2

-1.15

0.024

PRR16

-1.13

0.000